Highly differentiated genomic regions among different populations harbor many genes related to disease resistance and stress tolerance, potentially contributing to their local adaptations.
Wu Lab @ BTI
Genomics and Bioinformatics Team | 2024 Progress Report
View the Genomics Team progress report including all tables and figures in pages 12 – 19 of the pdf version of this report.
CucCAP scientists develop a super-pangenome for watermelon
A super-pangenome was constructed to represent the entire watermelon gene repertoire, uncovering several disease resistance genes that are present in wild watermelons while completely lost in watermelon cultivars.
CucCAP watermelon team | super-pangenome for watermelon
Scientists have constructed a comprehensive ‘super-pangenome’ for watermelon and its wild relatives, uncovering beneficial genes lost during domestication that could improve disease resistance and fruit quality of this vital fruit crop.
Genomics and Bioinformatics Team | 2023 Progress Report
Genomics and Bioinformatics Team | 2021 Progress Report
CucCAP researchers genetically characterize more than 2000 melon accessions in the U.S. National Plant Germplasm System
The U.S. National Plant Germplasm System maintains a melon germplasm collection from worldwide melon production areas and regions where primitive melons exist. The CucCAP team genetically characterized the collection to increase understanding of genetic diversity, phylogenetic relationships, and population structure of the collection, and to improve melon taxonomic classifications. A core collection was developed from the analysis to provide a public resource for future research and genomics-assisted breeding. Thirty-five morphological characters were evaluated in the core collection to identify genomic regions potentially related to fruit quality and other horticultural traits important in melon improvement.
CucCAP Bioinformatics team | comparative genomic analysis identifies relationships between bottle gourd and other cucurbits
Bottle gourd (Lagenaria siceraria) is an important vegetable crop as well as a rootstock for other cucurbit crops.