Tan, J.Y., Wang, Y.H., Dymerski, R.D., Wu, Z.M., Weng, Y. 2022. Sigma factor binding protein 1 (CsSIB1) is a putative candidate of the major effect QTL dm5.3 for downy mildew resistance in cucumber (Cucumis sativus). Theor Appl Genet. DOI: 10.1007/s00122-022-04212-x
Weng, Y. 2022. Chapter 3. The Cucumber Genome—An Update. In: Pandey, S, Weng, Y., Behera, T.K., Bo, K.L. (eds) The Cucumber Genome. Springer Nature Switzerland AG. pp 25-35
Zhang, H.J., Wang, Y.H., Tan, J.Y., Weng, Y. 2022. Functional copy number variation of CsSHINE1 is associated with fruit skin netting intensity in cucumber, Cucumis sativus. Theor Appl Genet DOI: 10.1007/s00122-022-04100-4
Mansfeld B.N., M. Colle, C. Zhang, Y.C. Lin, R. Grumet. 2020. Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit. BMC Genomics 21:628. DOI: 10.1186/s12864-020-07040-9
Pan, Y.P., C. Wen, Y.H. Han, Y.H. Wang, Y.H. Li, S. Li, X.M. Cheng, and Y. Weng. 2020. QTL for horticulturally important traits associated with pleiotropic andromonoecy and carpel number loci, and a paracentric inversion in cucumber. Theor Appl Genet. DOI: 10.1007/s00122-020-03596-y
Rett-Cadman, S., M. Colle, B. Mansfeld., C.S. Barry, Y.H. Wang, Y. Weng, L. Gao, Z. Fei, and R. Grumet. 2019. QTL and transcriptomic analyses implicate cuticle transcription factor SHINE as a source of natural variation for epidermal traits in cucumber fruit. Front Plant Sci. DOI: 10.3389/fpls.2019.01536
Sheng, Y.S., Y.P. Pan, Y.H. Li, L.M. Yang, and Y. Weng. 2019. Quantitative trait loci for fruit size and flowering time-related traits under domestication and diversifying selection in cucumber (Cucumis sativus L.). Plant Breeding, DOI: 10.1111/pbr.12754
Wang, Y.H., K.L. Bo, X.F. Gu, J.S. Pan, Y.H. Li, J.F. Chen, C.L. Wen, Z.H. Ren, H.Z. Ren, X.H. Chen, R. Grumet, and Y. Weng. 2019. Molecularly tagged genes and quantitative trait loci in cucumber with recommendations for QTL nomenclature. Horticulture Research 7: 3. DOI: 10.1038/s41438-019-0226-3
Wang, Y., J. Tan, Z. Wu, K. VandenLangenberg, T.C. Wehner, C. Wen, X. Zheng, K. Owens, A. Thornton, H.H. Bang, E. Hoeft, P.A.G. Kraan, J. Suelmann, J. Pan, and Y. Weng. 2019. STAYGREEN STAY HEALTHY a loss of susceptibility mutation in the STAYGREEN gene provides durable broad spectrum disease resistances for over 50 years of US cucumber production. New Phytologist 221:415-430. DOI: 10.1111/nph.15353
Zhao, J.Y., L. Jiang, G. Che, Y.P. Pan, Y.Q. Li, Y. Hou, W.S. Zhao, Y.T. Zhong, L. Ding, S.S. Yan,C.Z. Sun, R.Y. Liu, L.Y.Yan, T.Wu, X.X. Li, Y. Weng, and X.L. Zhao. 2019. A functional allele of CsFUL1 regulates fruit length through repressing CsSUP and inhibiting auxin transport in cucumber. Plant Cell. DOI: 10.1105/tpc.18.00905: CORRECTION Published June 2020. DOI: 10.1105/tpc.20.00150
Crane, M., T.C. Wehner, and R.P. Naegele. 2018. Cucumber cultivars for container gardening and the value of field trials for predicting cucumber performance in containers. HortScience 53: 16-22. DOI:10.21273/HORTSCI11955-17
Dia, M., T.C. Wehner, G.W. Elmstrom, A. Gabert, J.E. Motes, J.E. Staub, G.E. Tolla, and I.E. Widders. 2018. Genotype X enviroment interaction for yield of pickling cucumber in 24 U.S. environments. Open Agriculture 3: 1-6. DOI: 10.1515/opag-2018-0001
Pan, J.S., J.Y. Tan, Y.H. Wang, X.Y. Zheng, K. Owens, D.W. Li, Y.H. Li, and Y. Weng. 2018. STAYGREEN (CsSGR) is a candidate for the anthracnose (Colletotrichum orbiculare) resistance locus cla in Gy14 cucumber. Theoretical and Applied Genetics 131: 1577–1587 DOI: 10.1007/s00122-018-3099-1
Wang, X., K. Bao, U.K. Reddy, Y. Bai, S.A. Hammar, C. Jiao, T.C. Wehner, A.O. Ramírez-Madera, Y. Weng, R. Grumet, and Z. Fei. 2018. The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies and core collection development. Horticulture Research. 5:64. DOI: 10.1038/s41438-018-0080-8
Xu, W.W., J. Ji, Q. Xu, X.H. Qi, Y. Weng, X.H. Chen. 2018. The major-effect quantitative trait locus CsARN6.1 encodes an AAA ATPase domain-containing protein that is associated with waterlogging stress tolerance by promoting adventitious root formation.. Plant Journal 93(5):917-930 DOI: 10.1111/tpj.13819
Grumet, R., and M. Colle. 2017. Cucumber (Cucumis sativus) breeding line with young fruit resistance to infection by Phytophthora capsici. HortScience. 52:922-924. DOI: 10.21273/HORTSCI11423-16
Liu, P.N., H. Miao, H. W. Lu, J.Y. Cui, G.L. Tian, T.C. Wehner, X.F. Gu and S.P. Zhang. 2017. Molecular mapping and candidate gene analysis for resistance to powdery mildew in Cucumis sativus stem. Genetics and Molecular Research 16: 1-9. DOI: 10.4238/gmr16039680
Mansfeld, B.N., M. Colle, Y. Kang, A.D. Jones, and R. Grumet. 2017. Transcriptomic and metabolomic analyses of cucumber fruit peels reveal a developmental increase in terpenoid glycosides associated with age-related resistance to Phytophthora capsici. Horticulture Research. 4:17022. DOI: 10.1038/hortres.2017.22
Pan, Y.P., S.P. Qu, K.L. Bo, M.L. Gao, K.R. Haider, and Y. Weng. 2017. QTL mapping of domestication and diversifying selection related traits in round-fruited semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis). Theoretical and Applied Genetics 130:1531-1548. DOI: 10.1007/s00122-017-2908-2.
Wang, Y.H., K. VandenLangenberg, C.L. Wen, T.C. Wehner, Y. Weng. 2017. QTL mapping of downy and powdery mildew resistances in PI 197088 cucumber with 3 genotyping-by-sequencing in RIL population. Theor Appl Genet 131: 597–611. DOI: 10.1007/s00122-017-3022-1
Zhang, S., H. Miao, Z. Song, P. Liu, Y. Wang, T. C. Wehner, X. Gu, and S. Zhang. 2017. Molecular mapping and candidate gene analysis for fruit epidermal structure in cucumber. Plant Breeding. DOI: 10.1111/pbr.12510
VandenLangenberg, K. and T.C. Wehner. 2016. Downy mildew disease progress in resistant and susceptible cucumbers tested in the field at different growth stages. HortScience 51: 984-988. DOI: 10.21273/HORTSCI.51.8.984
Wang, Y.H., K. VandenLangenberg, T.C. Wehner, P.A.G. Kraan, J. Suelmann, X. Zheng, K. Owens, and Y. Weng. 2016. QTL mapping for downy mildew resistance in cucumber inbred line WI7120 (PI 330628). Theoretical and Applied Genetics 129: 1493-1505. DOI: 10.1007/s0012
Ando, K., K.M. Carr , M. Colle, B.N. Mansfeld, and R. Grumet. 2015. Exocarp properties and transcriptomic analysis of cucumber (Cucumis sativus) fruit expressing resistance to Phytophthora capsici. PLOS One 10: e0142133, DOI: 10.1371/journal.pone.0142133
Branham, S.E., Kousik, C.S., Mandal, M.K., Wechter, W.P. 2021. QTL mapping of resistance to powdery mildew race 1 in a recombinant inbred line population of melon. Plant Disease 105:3809-3815. DOI: 10.1094/PDIS-12-20-2643-RE
Mondal S, Jenkins Hladky LL, Fashing PL, McCreight JD, Turini TA, Wintermantel WM. First report of cucurbit yellow stunting disorder virus and cucurbit chlorotic yellows virus in melon in the Central Valley of California. Plant Dis. 2021 May 19. DOI: 10.1094/PDIS-01-21-0184-PDN.
Tamang, P., K. Ando, W.M. Wintermantel, and J.D. McCreight. 2021. QTL mapping of Cucurbit yellow stunting disorder virus resistance in melon accession PI 313970. HortScience 56:424–430. DOI: 10.21273/HORTSCI15495-20.
Toporek, S. M., Branham, S. E., Katawczik, M. M., Keinath, A. P., and Wechter, W. P. 2021. QTL mapping of resistance to Pseudoperonospora cubensis clade 1, mating type A2, in Cucumis melo. Theoret. Appl. Genet. 134:2577–2586. DOI: 10.1007/s00122-021-03843-w
Wang X, Ando K, Wu S, Reddy UK, Tamang P, Bao K, Hammar SA, Grumet R, McCreight JD, Fei Z 2021. Genetic characterization of melon accessions in the U.S. National Plant Germplasm System and construction of a melon core collection. Molecular Horticulture 1:11. DOI: 10.1186/s43897-021-00014-9
Wintermantel, W.M., L.L.J. Hladky, P. Fashing, K. Ando, and J.D. McCreight. 2019. First report of Cucurbit chlorotic yellows virus infecting melon in the New World. Plant Disease. 103:778. DOI: 10.1094/PDIS-08-18-1390-PDN
Zhao, G., Q. Lian, Z. Zhang, Q. Fu, Y. He, S. Ma, V. Ruggieri, A.J. Monforte, P. Wang, I. Julca, H. Wang, J. Liu, Y. Xu, R. Wang, J. Ji, Z. Xu, W. Kong, Y. Zhong, J. Shang, L. Pereira, J. Argyris, J. Zhang, C. Mayobre, M. Pujol, E. Oren, D. Ou, J. Wang, D. Sun, S. Zhao, Y. Zhu, N. Li, N. Katzir, A. Gur, C. Dogimont, H. Schaefer, W. Fan, A. Bendahmane, Z. Fei, M. Pitrat, T. Gabaldón, T. Lin, J. Garcia-Mas, Y. Xu, S. Huang. 2019. A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits. Nature Genetics 51, pages 1607–1615. DOI: 10.1038/s41588-019-0522-8
Galpaz, N., I. Gonda, D. Shem-Tov, O. Barad, G. Tzuri, S. Lev, Z. Fei, Y. Xu, N. Lombardi, L. Mao, C. Jiao, R. Harel-Beja, A. Doron-Faigenboim, O. Tzfadia, E. Bar, A. Meir, U. Saar, A. Fait, E. Halperin, M. Kenigswald, E. Fallik, G. Kol, G. Ronen, J. Burger, A. Gur, Y. Tadmor, V. Portnoy, A. Schaffer, E. Lewinsohn, J. Giovannoni, and N. Katzir. 2018. Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping. Plant J. DOI: 10.1111/tpj.13838
Branham, S.E., A. Levi, M. Katawczik, Z. Fei, W.P. Wechter. 2018. Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL. Theor Appl Genetics 131:829-837. DOI: 10.1007/s00122-017-3039-5
Daley, J., S. Branham, A. Levi, R. Hassell, and P. Wechter. 2017. Mapping resistance to Alternaria cucumerina in Cucumis melo. Phytopathology 107:427-432. DOI: 10.1094/PHYTO-06-16-0246-R.
McCreight, J.D., W.M. Wintermantel, and E.T. Natwick. 2017. Host plant resistance in melon to sweetpotato whitefly in California and Arizona. Acta Hort. 1151:237–244. DOI: 10.17660/ActaHortic.2017.1151.37.
Wintermantel, W.M., R.L. Gilbertson, E.T. Natwick, and J.D. McCreight. 2017. Emergence and epidemiology of Cucurbit yellow stunting disorder virus in the American Desert Southwest, and development of host plant resistance in melon. Virus Res. 241:213-219. DOI: 10.1016/j.virusres.2017.06.004
Nimmakayala, P., Y. Tomason, V.L. Abburi, A. Alvarado, T. Saminathan, V.G. Vajja, G. Salazar, G. Panicker, A. Levi, W.P. Wechter, J.D. McCreight, A. Korol, Y. Ronin, J. Garcia-Mas, and U.K. Reddy. 2016. Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map. Frontiers in Plant Science 22 September 2016. DOI: 10.3389/fpls.2016.01437.
Sabanadzovic, S., R. Valverde, J.D. McCreight, W.M. Wintermantel, and N. Aboughanem-Sabanadzovic. 2016. Cucumis melo endornavirus: Genome organization, host range and co-divergence with the host. Virus Research 214:49–58. DOI: 10.1016/j.virusres.2016.01.001.
Pumpkin and Squash – Breeding, Genetics, Genomics, Pathology Publications
Indermaur, E. J., Day, C. T. C., and Smart, C. D. 2022. Evaluation of squash cultivars and breeding lines for powdery mildew resistance, 2021. Plant Disease Management Reports. Report No. 16:V171
Luckew A., Meru G., Wang Y.Y., Mwatuwa R., Paret M., Carvalho R., Kalischuk M., Ribeiro da Silva, A.L.B., Candian J., Dutta B., Srinivasan R., Kavalappara S.R., RRD NCK, Bag S., McGregor C. (2022) Field Evaluation of Cucurbita Germplasm for Resistance to Whiteflies and Whitefly-transmitted Viruses. HortScience 57:337-344
Reddy U.K., Natarajan P., Lakshmi Abburi V., Tomason Y., Levi A., Nimmakayala P. What makes a giant fruit? Assembling a genomic toolkit underlying various fruit traits of the mammoth group of Cucurbita maxima. Frontiers in Genetics. 2022 13:1005158
Alzohairy, S.A., Hammerschmidt, R., and Hausbeck, M.K. 2021. Antifungal Activity in Winter Squash Fruit Peel in Relation to Age Related Resistance to Phytophthora capsici. Physiological and Molecular Plant Pathology 114:101603. DOI: 10.1016/j.pmpp.2021.101603
Kavalappara, S.R., Milner, H., Sparks, A., McGregor, C., Wintermantel, W.M. & S. Bag 2021. First report of cucurbit chlorotic yellows virus in association with other whitefly-transmitted viruses in squash (Cucurbita pepo) in Georgia. Plant Disease/ DOI: 10.1094/PDIS-11-20-2429-PDN
Kousik, C.S., Vogel, G., Ikerd, J.L., Mandal, M.K., Mazourek, M., Smart, C.D. and Turechek, W.W. 2021. New Sources of Resistance in Winter Squash (Cucurbita moschata) to Phytophthora Crown Rot and Their Relationship to Cultivated Squash. Plant Health Progress/ DOI: 10.1094/PHP-02-21-0047-FI
Mazourek M, Hernandez C, Fabrizio J. 2021. Reconsidering Approaches to Selection in Winter Squash Improvement: Improved Quality and Breeding Efficiency. In: Plant Breeding Reviews, Volume 44. (Ed: Goldman I). John Wiley & Sons, Inc. p. 247-272. DOI: 10.1002/9781119717003.ch7
Michael, V.N.; Fu, Y.; Shrestha, S.; Meru, G. 2021. A Novel QTL for Resistance to Phytophthora Crown Rot in Squash. Plants 10:2115.DOI: 10.3390/plants10102115
Seda-Martínez, W., L. Wessel-Beaver, A. Linares-Ramírez and J.C.V. Rodrigues. 2021. Virus quantification, flowering, yield, and fruit quality in tropical pumpkin (Cucurbita moschata Duchesne) genotypes susceptible or resistant to two potyviruses. HortScience 56(2). DOI: 10.21273/HORTSCI15525-20
Vogel, GM, LaPlant, KE, Mazourek, M, Gore, MA and Smart, CD. 2021. A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash. Theoretical and Applied Genetics 134:1015-103. DOI: 10.1007/s00122-020-03747-1
Alzohairy, S.A., Hammerschmidt, R., and Hausbeck, M.K. 2020. Changes in winter squash fruit exocarp structure associated with age-related resistance to Phytophthora capsici. Phytopathology 110(2):447-455. DOI: 10.1094/PHYTO-04-19-0128-R
Brzozowski, L. J., , M.A. Gore, A.A. Agrawal, M. Mazourek. 2020. Divergence of defensive cucurbitacins in independent Cucurbita pepo domestication events leads to differences in specialist herbivore preference. Plant Cell Env. DOI: 10.1111/pce.13844
Jeon, S., C.S. Krasnow, G.D. Bhalsod, B.R. Harlan, M.K. Hausbeck, S.I. Safferman, and W. Zhang. 2020. Control of Phytophthora capsici diseases in greenhouse squash by fast-flow filtration. Acta Horticulturae 1296: 32. DOI: 10.17660/ActaHortic.2020.1296.32
LaPlant, K.E., G. Vogel, E. Reeves, C.D. Smart, and M. Mazourek. 2020. Performance and resistance to Phytophthora crown and root rot in Cucurbita pepo lines. HortTechnology 30:608-618 DOI: 10.21273/HORTTECH04636-20
Alzohairy, S.A., R. Hammerschmidt, and M.K. Hausbeck. 2019. Changes in winter squash fruit exocarp structure associated with age-related resistance to Phytophthora capsici. Phytopathology 110:447-455. DOI: 10.1094/PHYTO-04-19-0128-R
Dhillon, N.P.S., S. Sanguansil , S. Srimat, S. Laenoi, R. Schafleitner, and J.D. McCreight. 2019. Inheritance of resistance to cucurbit powdery mildew in bitter gourd. HortScience 54:1013–1016. DOI: 10.21273/HORTSCI13906-19
Krasnow, C.S., R. Hammerschmidt, and M.K. Hausbeck. 2017. Characteristics of resistance to Phytophthora root and crown rot in Cucurbita pepo L. Plant Disease 101:659-665. DOI: 10.1094/PDIS-06-16-0867-RE.
Holdsworth, W.L., K.E. LaPlant, D.C. Bell, M.M. Jahn, and M. Mazourek. 2016. Cultivar-Based Introgression Mapping Reveals Wild-Species Derived Pm-0 The Major Powdery Mildew Resistance Locus in Squash. PLOS ONE. e0167715. DOI: 10.1371/journal.pone.0167715
Krasnow, C.S., and M.K. Hausbeck. 2016. Evaluation of winter squash and pumpkin cultivars for age-related resistance to Phytophthora capsici fruit rot. HortScience 51:1251-1255. DOI: 10.21273/HORTSCI11173-16
Zhang, G., Y. Ren, H. Sun, S. Guo, F. Zhang, J. Zhang, H. Zhang, Z. Jia, Z. Fei, Y. Xu, and H. Li. 2015. A high-density genetic map for anchoring genome sequences and identifying QTLs associated with dwarf vine in pumpkin (Cucurbita maxima Duch.). BMC Genomics 16:1101. DOI: 10.1186/s12864-015-2312-8
Chanda, B., Wu, S., Fei, Z., Ling, K., Levi, A. 2022. Elevated expression of ribosome-inactivating protein (RIP) genes in potyvirus-resistant watermelon in response to viral infection. Canadian Journal of Plant Pathology. 44(4):615-625. DOI: 10.1080/07060661.2021.2021450
Karki, K., Negi, V.S., Coolong, T., Petkar, A., Mandal, M., Kousik, C.S., Gitaitis, R., Hajihassani, A., and Dutta, B. 2022. Micronutrients Affect Expression of Induced Resistance Genes in Hydroponically Grown Watermelon against Fusarium oxysporum f. sp. niveum and Meloidogyne incognita. Pathogens 2022, 11, 1136. DOI: 10.3390/pathogens11101136
Katuuramu, D.N., Branham, S.E., Levi, A., Wechter, W.P. 2022. Genome-wide association analysis of resistance to Pseudoperonospora cubensis in citron watermelon. Plant Disease. 106:1952-1958. DOI: 10.1094/PDIS-08-21-1611-RE.
Kousik, C.S., Ikerd, J.L., Wechter, W.P., Branham, S.E., Turechek, W.W. 2022. Broad resistance to post-harvest fruit rot in USVL watermelon germplasm lines to isolates of Phytophthora capsici from across USA. Plant Disease 106:711-719. DOI: 10.1094/PDIS-11-20-2480-RE
Perez-Escobar ,O.A., Tusso S., Przelomska N.A.S., Wu S., Ryan P., Nesbitt M., Silber M.V., Preick M., Fei Z., Hofreiter M., Chomicki G., Renner S.S. (2022) Genome sequencing of up to 6,000-yr-old Citrullus seeds reveals use of a bitter-fleshed species prior to watermelon domestication. Molecular Biology Evolution 8, msac168
Garcia-Lozano, M., Natarajan, P., Levi, A., Katam, R., Nimmakayala, P., Reddy, U. 2021. Altered chromatin confirmation and transcriptional regulation in watermelon following genome doubling. Plant Journal. DOI: 10.1111/tpj.15256
Joshi, V., Nimmakayala, P., Song, Q., Abburi, V., Natarajan, P., Levi, A., Crosby, K., and Reddy, U.K. 2021. Genome-wide association study and population structure analysis of seed-bound amino acids and total protein in watermelon. PeerJ9:e12343. DOI: 10.7717/peerj.12343
Karki, K., Coolong, T., Kousik, C.S., Petkar, A., Myers, B.K., Hajihassani, A., Mandal, M., Dutta, B. 2021. The Transcriptomic Profile of Watermelon Is Affected by Zinc in the Presence of Fusarium oxysporum f. sp. niveum and Meloidogyne incognita. Pathogens 2021, 10, 796. DOI: 10.3390/pathogens10070796
Renner SS, Wu S, Perez-Escobar OA, Silber MV, Fei Z, Chomickie G. 2021. A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons. Proc Natl Acad Sci USA118:e2101486118 DOI: 10.1073/pnas.2101486118
Sorokina, M., Mccaffrey, K.S., Ordovas, J.M., Deaton, E.E., Ma, G., Perkins-Veazie, P.M., Steinbeck, C., Levi, A., Parnell, L.D. 2021. A catalog of natural products occurring in watermelon – Citrullus lanatus. Frontiers in Nutrition. 8:602. DOI: 10.3389/fnut.2021.729822
Vijay, J., Suhas, S., Venkata Lakshmi, A., Lopez, C., Padma, N., Levi, A., Umesh, R. 2021. Haplotype networking of GWAS hits for citrulline content indicates positive selection leading to the domestication of watermelon. Frontiers in Plant Science. 20:5392. DOI: 10.3390/ijms20215392
Gimode, W. 2020. Fine-mapping of a major quantitative trait locus (QTL) controlling flowering time and QTL mapping of gummy stem blight in watermelon. PhD Dissertation University of Georgia.
Guo, S., H. Sun, Y. Xu, and Z. Fei. 2020. Citrullus lanatus (Genome of the month). Trends in Genetics 36(6):456-457. DOI: 10.1016/j.tig.2020.01.010
Katuuramu, D.N., W.P. Wechter, M. Washington, M.I. Horry, M.A. Cutulle, R.L. Jarret, A. Levi. 2020. Phenotypic diversity for root traits and identification of superior germplasm for root breeding in watermelon. HortScience. 55:12-72-1279. DOI: 10.21273/HORTSCI15093-20 .
Kousik, C.S. and S. Adkins. 2020. Detection of Cucurbit yellow stunting disorder virus infecting watermelon in South Carolina. Plant Health Progress. 2:133-134. DOI: 10.1094/PHP-03-20-0016-BR
Meru, G. and C. McGregor. 2020. Effect of various soil media on disease severity of Fusarium wilt in watermelon. American Journal of Plant Sciences, 11, 1890-1898.
Ren, Y., H. Sun, M. Zong, S. Guo, Z. Ren, J. Zhao, M. Li, J. Zhang, S. Tian, J. Wang, Y. Yu, G. Gong, H. Zhang, H. He, L. Li, X. Zhang, F. Liu, Z. Fei, and Y. Xu. 2020. Localization shift of a sugar transporter contributes to phloem unloading in sweet watermelons. New Phytologist DOI: 10.1111/nph.16659
Branham, S.E., W.P. Wechter, K. Ling, B. Chanda, L. Massey, G. Zhao, N. Guner, M. Bello, E. Kabelka, Z. Fei, and A. Levi. 2019. QTL mapping of resistance to Fusarium oxysporum f. sp. niveum race 2 and Papaya ringspot virus in Citrullus amarus. Theoretical and Applied Genetics. DOI: 10.1007/s00122-019-03500-3.
Branham, S.E., A. Levi, and W.P. Wechter. 2019. QTL Mapping Identifies Novel Source of Resistance to Fusarium Wilt Race 1 in Citrullus amarus. Plant Disease 103:984-989. APS Publications: Published Online:11 Mar 2019. DOI: 10.1094/PDIS-09-18-1677-RE
Branham, S.E., A. Levi, M.L. Katawczik, and W.P. Wechter. 2019. QTL mapping of resistance to bacterial fruit blotch in Citrullus amarus. Theoretical and Applied Genetics. DOI: 10.1007/s00122-019-03292-6
Gimode, W., Lonnee, M. & C. McGregor. 2019. Resistance response of Citrullus genotypes to Stagonosporopsis spp. isolates causing gummy stem blight. Cucurbit Genetics Cooperative Report 42: 1-6.
Guner, N., Z. Pesic-VanEsbroeck, L.A. Rivera-Burgos and T.C. Wehner. 2019. Screening for resistance to Zucchini yellow mosaic virus in the watermelon germplasm. HortScience 54: 206-211. DOI: 10.21273/HORTSCI13325-18.
Guo, S., S. Zhao, H. Sun, X. Wang, S. Wu, T. Lin, Y. Ren, L. Gao, Y. Deng, J. Zhang, X. Lu, H. Zhang, J. Shang, G. Gong, C. Wen, N. He, S. Tian, M. Li, J. Liu, Y. Wang, Y. Zhu, R. Jarret, A. Levi, X. Zhang, S. Huang, Z. Fei, W. Liu, Y. Xu. 2019. Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits. Nature Genetics 51:1616-1623. DOI: 10.1038/s41588-019-0518-4
Joshi, V., S. Shinde, P. Nimmakayala, V.L. Abburi, S.B. Alaparthi, C. Lopez-Ortiz, and U.K. Reddy. 2019. Haplotype networking of GWAS hits for citrulline variation associated with the domestication of watermelon. Int J Mol Sci 20:5392. DOI: 10.3390/ijms20215392
Kousik, C.S., J.L. Ikerd, and M.K. Mandal. 2019. Relative susceptibility of commercial watermelon varieties to powdery mildew. Crop Protection 125:104910. DOI: 10.1016/j.cropro.2019.104910
Simmons, A.M., R.L. Jarret, C.L. Cantrell, and A. Levi. 2019. Citrullus ecirrhosus: Wild source of resistance against Bemisia tabaci (Hemiptera: Aleyrodidae) for cultivated watermelon. Journal of Economic Entomology DOI: 10.1093/jee/toz069.
Sui, X., R. Li, M. Shamimuzzaman, Z. Wu, and K.S. Ling. 2019. Understanding the transmissibility of cucumber green mottle mosaic virus in watermelon seeds and seed health assays. Plant Disease. DOI: 10.1094/PDIS-10-18-1787-RE
Simmons, A.M., R.L. Jarret, C.L. Cantrell, and A. Levi. 2019. Citrullus ecirrhosus: Wild source of resistance against Bemisia tabaci (Hemiptera: Aleyrodidae) for cultivated watermelon. Journal of Economic Entomology DOI: 10.1093/jee/toz069
Wu, S., X. Wang, U. Reddy, H. Sun, K. Bao, L. Gao, L. Mao, T. Patel, C. Ortiz, V. Abburi, P. Nimmakayala, S. Branham, P. Wechter, L. Massey, K. Ling, S.Kousik, S. Hammar, Y. Tadmor, V. Portnoy, G. Vitaly, K. Amit; N. Katzir, N. Guner, Nihat; A. Davis, A. Hernandez, C. Wright, C. McGregor, R. Jarret, X. Zhang, Y. Xu, T. Wehner, R. Grumet, A. Levi, and Z. Fei. 2019. Genome of ‘Charleston Gray’, the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection. Plant Biotechnology J 17:2246-2258. DOI: 10.1111/pbi.13136
Branham, S.E., W.P. Wechter, S. Lambel, L. Massey, M. Ma, J. Fuave, M.W. Farnham, and A. Levi. 2018. QTL-seq and marker development for resistance to Fusarium oxysporum f. sp. niveum race 1 in cultivated watermelon. Molec Breed 38:139. DOI: 10.1007/s11032-018-0896-9
Fall, L.A., J. Clevenger, C. McGregor. 2018. Assay development and marker validation for marker assisted selection of Fusarium oxysporum f. sp. niveum race 1 in watermelon. Molec Breed 38:130. DOI: 10.1007/s11032-018-0890-2
Guner, N., Z. Pesic-VanEsbroeck, L.A. Rivera-Burgos, and T.C. Wehner. 2018. Inheritance of resistance to Papaya ringspot virus-watermelon strain in watermelon. HortScience 53(5): 1-4. DOI:10.21273/HORTSCI12944-18
Guner, N., L.A. Rivera-Burgos, and T.C. Wehner. 2018. Inheritance of resistance to Zucchini yellow mosaic virus in watermelon. HortScience 53: 1115-1118. DOI: 10.21273/HORTSCI13169-18
Kantor, M., A. Levi. 2018. Utilizing genetic resources and precision agriculture to enhance resistance to biotic and abiotic stress in watermelon. Notulae Scientia Biologicae. 10: 2067-3205. DOI: 10.15835/nsb10110242
Kantor, M., A. Levi, J.A. Thies, N. Guner, C. Kantor, S. Parnham, A. Boroujerdi. 2018. NMR analysis reveals a wealth of metabolites in root-knot nematode resistant roots of Citrullus amarus watermelon plants. Journal of Nematology. 50:1-15. DOI: 10.21307/jofnem-2018-030
Kousik, C.S., J. Ikerd, M. Manda, S. Adkins, W.W. Turechek. 2018. Watermelon germplasm lines USVL608-PMR, USVL255-PMR, USVL313-PMR, and USVL585-PMR with broad resistance to powdery mildew. HortScience 53:1212-1217. DOI: 10.21273/HORTSCI12979-18
Kousik, C.S., J.L. Ikerd, and W. Turechek. 2018. Development of Phytophthora fruit rot caused by Phytophthora capsici on resistant and susceptible watermelon fruit of different ages. Plant Disease 102:370-374. DOI:10.1094/PDIS-06-17-0898-RE
Kousik, C.S., M.K. Mandal, and R. Hassell. 2018. Powdery mildew resistant rootstocks that impart tolerance to grafted susceptible watermelon scion seedlings. Plant Disease. Plant Disease. 102:1290-1298. DOI: 10.1094/PDIS-09-17-1384-RE
Saminathan, T., M. García , B. Ghimire, C. Lopez, A. Bodunrin, P. Nimmakayala, V.L. Abburi, A. Levi, N. Balagurusamy, U.K. Reddy. 2018. Metagenomic and metatranscriptomic analyses of diverse watermelon cultivars reveal the role of fruit associated microbiome in carbohydrate metabolism and ripening of mature fruits. Front Plant Sci. 9:4. DOI: 10.3389/fpls.2018.00004
Branham, S., L. Vexler, A. Meir, G. Tzuri, Z. Frieman, A. Levi, W.P. Wechter, Y. Tadmor and A. Gur. 2017. Genetic mapping of a major codominant QTL associated with β-carotene accumulation in watermelon. Mol. Breeding DOI: 10.1007/s11032-017-0747-0
Gusmini, G., L.A. Rivera-Burgos and T.C. Wehner. 2017. Inheritance of resistance to gummy stem blight in watermelon. HortScience 52: 1477-1482. DOI: 10.21273/JASHS03834-16
Kousik, C.S., P. Ji, D. Egel, and L.M. Quesada-Ocampo. 2017. Fungicide rotation schemes for managing Phytophthora fruit rot of watermelon across Southeastern United States. Plant Health Progress 18: 28-34. DOI: 10.1094/PHP-RS-16-0059
Levi, A. and K. Ling. USVL-380, a Zucchini yellow mosaic virus-resistant watermelon breeding line. 2017. HortScience 52:1448–1450. DOI: 10.21273/HORTSCI12292-17
Levi, A., A.M. Simmons, L. Massey, J. Coffey, W.P. Wechter, R.L. Jarret, Y. Tadmor, P. Nimmakayala, and U.K. Reddy. 2017. Genetic diversity in the desert watermelon Citrullus colocynthis and its relationship with Citrullus species as determined by high-frequency oligonucleotides-targeting active gene markers. J. Amer. Soc. Hort. Sci. 142(1):47–56. DOI: 10.21273/JASHS03834-16
Ren, Y., S. Guo, J. Zhang, H. He, H. Sun, S. Tian, G. Gong, H. Zhang, A. Levi, Y. Tadmor, and Y. Xu. 2017. A tonoplast sugar transporter underlies a sugar accumulation QTL in watermelon. Plant Physiology DOI: 10.1104/pp.17.01290
Wehner, T.C., R.P. Naegele and P. Perkins-Veazie. 2017. Heritability and genetic variance components associated with citrulline, arginine, and lycopene content in diverse watermelon cultigens. HortScience 52: 936-940. DOI: 10.21273/HORTSCI11255-16
Branham, S.E., A. Levi, M.W. Farnham, and W.P. Wechter. 2016. A GBS‑SNP‑based linkage map and quantitative trait loci (QTL) associated with resistance to Fusarium oxysporum f. sp. Niveum race 2 identified in Citrullus lanatus var. citroides. Theor Appl Genet. 2017 Feb;130(2):319-330. Epub 2016 Nov 1. DOI: 10.1007/s00122-016-2813-0
Kousik, C.S., J. Brusca, and W. W. Turechek. 2016. Diseases and disease management strategies take top research priority in the Watermelon Research and Development Group members survey (2014 to 2015). Plant Health Progress. 17:53-58. DOI: 10.1094/PHP-S-15-0047
Levi, A., J. Coffey, L.M. Massey, N. Guner, E. Oren, Y. Tadmor, and K.S. Ling. 2016. Resistance to papaya ringspot virus-watermelon strain (PRSV-W) in the desert watermelon Citrullus colocynthis. HortScience 51:4–7. DOI: 10.21273/HORTSCI.51.1.4
Levi, A., R.K. Harris-Shultz, and K.S. Ling. 2016. USVL-370, a Zucchini yellow mosaic virus–resistant Watermelon Breeding Line. HortScience 51:107–109. DOI: 10.21273/HORTSCI12292-17
Meru, G. and C. McGregor. 2016. Genotyping by sequencing for SNP discovery and genetic mapping of resistance to race 1 of Fusarium oxysporum in watermelon. Scientia Horticulturae 209: 31-40. DOI: 10.1016/j.scienta.2016.06.005
Natwick, E., M.I. Lopez, W.M. Wintermantel, J.D. McCreight, O. Batuman, and R.L. Gilbertson. 2016. Watermelon whitefly insecticide efficacy trial, 2015. Arthropod Management Tests 41 (1): tsw088 DOI: 10.1093/amt/tsw088
Niu, X., X. Zhao, K. Ling, A. Levi, Y. Sun, and M. Fan. 2016. The FonSIX6 gene acts as an avirulence effector in the Fusarium oxysporum f. sp. niveum – watermelon pathosystem. Nature Scientific Reports 6:28146. DOI: 10.1038/srep28146
Thies, J.A., J.J. Ariss, C.S. Kousik, R.L. Hassell, and A. Levi. 2016. Resistance to Southern Root-knot Nematode (Meloidogyne incognita) in Wild Watermelon (Citrullus lanatus var. citroides) Populations. Journal of Nematology 48:14–19. DOI: 10.21307/jofnem-2017-004
Wechter, W.P., M.M. McMillan, M.W. Farnham, and A. Levi. 2016. Watermelon germplasm lines USVL246-FR2 and USVL252-FR2 tolerant to Fusarium oxysporum f. sp. niveum race 2. HortScience 51:1065-1067. DOI: 10.21273/HORTSCI.51.8.1065
Cucurbits (multiple crops & species) Breeding, Genetics, and Genomics
Yu, J., Wu, S., Sun, H., Wang, X., Tang, X., Guo, S., Zhang, Z., Huang, S., Xu, Y., Weng, Y., Mazourek, M., McGregor, C., Renner, S.S., Branham, S., Kousik, C., Wechter, W.P., Levi, A., Grumet, R., Zheng, Y., Fei, Z. (2022) CuGenDBv2: An updated database for cucurbit genomics. Nucleic Acids Research.
Grumet, R., J.D. McCreight, C. McGregor, Y. Weng, M. Mazourek, K. Reitsma, J. Labate, A. Davis, and Z. Fei. 2021. Genetic resources and vulnerabilities of major cucurbit crops. Genes, 12(8), 1222. DOI: 10.3390/genes12081222
Grumet, R., Z. Fei, A. Levi, M. Mazourek, J.D. McCreight, J. Schultheis, Y. Weng, M. Hausbeck, S. Kousik, K.S. Ling, A. Linares-Ramirez, C. McGregor, L. Quesada-Ocampo, U. Reddy, C. Smart, P. Wechter, T. Wehner, L. Wessel-Beaver, W.M. Wintermantel. 2020. The CucCAP project: Leveraging applied genomics to improve disease resistance in cucurbit crops. Proceedings 6th International Symposium on Cucurbits. Ghent, Belgium. Eds: Bleyaert, P and M.C. V. Labeke. Ghent, Belgium. Acta Horticuluturae 1294:91-104.
Guo, S., H. Sun, Y. Xu, and Z. Fei. 2020. Citrullus lanatus.Trends in Genetics | (Genome of the Month). DOI: 10.1016/j.tig.2020.01.010
Ma L., Q. Wang, J. Mu, A. Fu, C. Wen, X. Zhao, L. Gao, J. Li, K. Shi, Y. Wang, X. Zhang, X. Zhang, Z. Fei, D. Grierson, J. Zuo. 2020. The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening. Horticulture Research 7: 19. DOI: 10.1038/s41438-020-00423-9
Pan, Y.P., Y.H. Wang, C. McGregor, S. Liu, F.S. Luan, M.L. Gao, and Y. Weng. 2020. Genetic architecture of fruit size and shape variation in cucurbits: a comparative perspective. Theor Appl Genet 133: 1-21. DOI: 10.1007/s00122-019-03481-3
Wehner, T.C. and R.P. Naegele. 2019. Advances in breeding of cucumber and watermelon (p. 188). Burleigh Dodds Science Publishing, Cambridge, UK, 225 p. DOI: 10.19103/AS.2019.0045.30
Wehner, T.C., R. Naegele, J. Myers, K. Crosby, and N.P.S. Dhillon. 2019. Cucurbits. CAB International, New York, NY, 225 p.
Weng, Y., Garcia-Mas, J., Levi, A., Luan, F. 2020. Editorial: translational research for cucurbit molecular breeding: traits, markers, and genes. Frontiers in Plant Science. 11. Article 615346. DOI: 10.3389/fpls.2020.615346
Zhang, Z., Y. Zheng, B.K. Ham, S. Zhang, Z. Fei, and W.J. Lucas. 2019. Plant lncRNAs are enriched in and move systemically through the phloem in response to phosphate deficiency. J Integr Plant Biol 61:492-508.DOI: 10.1111/jipb.12715
Dhillon, N.P.S., S. Sanguansil, S. Srimat, R. Schafleitner, B. Manjunath, P. Agarwal, Q. Xiang, M.A.T. Masud, T. Myint, N.T. Hanh, T.K. Cuong, C.H. Balatero, V. Salutan-Bautista, M. Pitrat, A. Lebeda, and J.D. McCreight. 2018. Cucurbit powdery mildew-resistant bitter gourd breeding lines reveal four races of Podosphaera xanthii in Asia. HortScience 53:337–341. DOI: 10.21273/HORTSCI12545-17
Kousik, C.S., J.L. Ikerd, M.K. Mandal, S. Adkins, C.G. Webster, and W.W. Turechek. 2018. Powdery mildew-resistant bottle gourd germplasm lines: USVL351-PMR and USVL482-PMR. HortScience 53(8):1224-1227. DOI: 10.21273/HORTSCI13067-18
Mansfeld, B.N., and R. Grumet. 2018. QTLseqr: An R package for bulk segregant analysis with next generation sequencing. The Plant Genome. DOI: 10.3835/plantgenome2018.01.0006
Zheng, Y., S. Wu, Y. Bai, H. Sun, C. Jiao, S. Guo, K. Zhao, J. Blanca, Z. Zhang, S. Huang, Y. Xu, Y. Weng, M. Mazourek, U.K. R., K. Ando, J.D. McCreight, A.A. Schaffer, J. Burger, Y. Tadmor, N. Katzir, X. Tang, Y. Liu, J.J. Giovannoni, K. Ling, W.P. Wechter, A. Levi, J. Garcia-Mas, R. Grumet, and Z. Fei. 2018. Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. Nucleic Acids Research, Volume 47, Issue D1, 8 January 2019, Pages D1128–D1136. DOI: 10.1093/nar/gky944
Cutulle, M.A., H. Harrison, C.S. Kousik, P. Wadl, and A. Levi. 2017. Bottle gourd genotypes vary in clomazone tolerance. HortScience 52:1687–1691. DOI: 10.21273/HORTSCI12201-17
Dia, M., T.C. Wehner, and C. Arellano. 2017. RGxE: An R program for genotype x environment interaction analysis. Amer. J. Plant Sci. 8: 1672-1698. DOI: 10.4236/ajps.2017.87116
Dhillon, N.P.S., S. Phethin, S. Sanguansil, and J.D. McCreight. 2017. Early staminate flowering monoecious lines have potential as pollenizers for gynoecious hybrid bitter gourd cultivars. Pak. J. Agri. Sci. 54:27–33. DOI: 10.21162/PAKJAS/17.4354
Grumet, R., J. Garcia-Mas, and N. Katzir. 2017. Cucurbit Genetics and Genomics: A Look to the Future. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI: 10.1007/7397_2017_1
Grumet, R., N. Katzir, and J. Garcia-Mas. 2017. Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models. Vol. 20 Springer International Publishing. ISBN978-3-319-49330-5. DOI: 10.1007/978-3-319-49332-9
Levi, A., R. Jarret, S. Kousi., P. Wechter, P. Nimmakayala, and U.K. Reddy. 2017. Genetic Resources of Watermelon. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI: 10.1007/7397_2016_34
McCreight, J.D. 2017. Botany and culture (p. 1-9). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn.Published Online:2 Nov 2018 DOI: 10.1094/9780890545744.001
McCreight, J.D. and A.P. Keinath. 2017. Crown blight of melons and crown decline of watermelon (p. 185–186). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.004
Nimmakayala, P., T. Saminathan, V. L. Abburi, L. K. Yadav, Y. Tomason, A. Levi, Y. Weng, and U.K. Reddy. 2017. Comparative Genomics of the Cucurbitaceae. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI: 10.1007/7397_2017_2
Sun, H., S. Wu, G. Zhang, C. Jiao, S. Guo, Y. Ren, J. Zhang, H. Zhang, G. Gong, Z. Jia, F. Zhang, J. Tian, W.J. Lucas, J.J. Doyle, H. Li, Z. Fei, Y. Xu. 2017. Karyotype stability and unbiased fractionation in the paleo-allotetraploid Cucurbita genomes. Molecular Plant, DOI: 10.1016/j.molp.2017.09.003
Wehner, T.C. 2017. Bitter fruit (p. 185). In: A.P. Keinath, W. M. Wintermantel and T. A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.004
Wehner, T.C. 2017. Pollination problems (p. 188). In: A.P. Keinath, W. M. Wintermantel and T. A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.004
Wu, S., M. Shamimuzzaman, H. Sun, J. Salse, X. Sui, A. Wilder, Z. Wu, A. Levi, Y. Xu, K-S. Ling, and Z. Fei. 2017. The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus. Plant Journal 92(5):963-975. DOI: 10.1111/tpj.13722
Dhillon, N.P.S., S. Sanguansil, R. Schafleitner, Y.-W. Wang, and J.D. McCreight. 2016. Diversity among a wide Asian Collection of bitter gourd landraces and their genetic relationships with commercial hybrid cultivars. J. Amer. Soc. Hort. Sci. 141:475–484. DOI: 10.21273/JASHS03748-16.
Kousik, C. S., J. Ikerd, and M. Mandal. 2016. First report of fruit rot of ridge gourd (Luffa acutangula) caused by Sclerotium rolfsii. Plant Health Progress. 17:13-14. [PDF] DOI: 10.1094/PHP-BR-15-0048.
Bai, Y., Z. Zhang, and Z. Fei. 2016. Databases and Bioinformatics for Cucurbit Species. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI: 10.1007/7397_2016_27
Dhillon, N.P.S., S. Sanguansil, S.P. Singh, M.A.T. Masud, P. Kumar, L.K. Bharathi, H. Yetisir, R. Huang, D.X. Canh, and J.D. McCreight. 2016. Gourds: Bitter, bottle, wax, snake, sponge and ridge. Chapter 7. DOI: 10.1007/7397_2016_24
Grumet, R. and M. Colle. 2016. Genomic Analysis of Cucurbit Fruit Growth. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI: 10.1007/7397_2016_4
McCreight, J.D. 2016. Cultivation and Uses of Cucurbits. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham. DOI: 10.1007/7397_2016_2
Naegele, R.P. and T.C. Wehner. 2016. Genetic Resources of Cucumber. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham. DOI: 10.1007/7397_2016_15
Weng, Y., 2016. The Cucumber Genome. In: Grumet R., Katzir N., Garcia-Mas J. (eds.) Genetics and Genomics of Cucurbitaceae. Plant Genetics and Genomics: Crops and Models, vol 20. Springer, Cham DOI 10.1007/7397_2016_6
Integrated Crop and Disease Management
Adeleke IA, Kavalappara SR, McGregor C, Srinivasan R, Bag S. Persistent and asymptomatic virus infections are common along with whitefly-transmitted viruses impacting cantaloupe and watermelon in Georgia, USA. Viruses 14, 1310.
Adeleke IA, Kavalappara SR, Torrance T, Bennett JE, McGregor C, Srinivasan R, Bag S. First report of watermelon crinkle leaf-associated virus 1 naturally infecting watermelon (Citrullus lanatus) in Georgia, USA. Plant Disease 106:8, 2273
Bello Rodriguez, J.C., Higgins, D.S., Sakalidis, M., Quesada-Ocampo, L., Martin, F.N., and Hausbeck, M.K. Clade-specific monitoring of airborne Pseudoperonospora spp. Sporangia using mitochondrial DNA markers for disease management of cucurbit downy mildew. Phytopathology 112(10): 2110-2125. 2015-51181-24285
Govindasamy, Ramu; Arumugam, Surendran; Hausbeck, Mary; Wyenandt, Andrew; Simon, James E. 2022. The impact of downy mildew on high-value cucurbit crops in the US: an econometric analysis. Agricultural Economics Research Review 35: 37-44.
Kilduff, Alice and Daniel Tregeagle. “Willingness-to-Pay for Produce: A Meta-Regression Analysis Comparing the Stated Preferences of Producers and Consumers.” Horticulturae, 2022, 8(4), 290.
Bello Rodriguez, J.C., Hausbeck, M., and Sakalidis, M.L. 2021. Application of target enrichment sequencing for population genetic analyses of the obligate plant pathogens Pseudoperonospora cubensis and P. humuli in Michigan. Molecular Plant-Microbiome Interactions 34(10): 1103-1118. 2015-51181-24285 DOI: 10.1094/MPMI-11-20-0329-TA
Bello Rodriguez, J.C., Sakalidis, M.L., Perla, D., and Hausbeck, M.K. 2021. Detection of Airborne Sporangia of Pseudoperonospora cubensis and P. humuli in Michigan using Burkard Spore Traps Coupled to Quantitative PCR. Plant Disease 105(5):1373-1381. DOI: 10.1094/PDIS-07-20-1534-RE
Chanda, B., Shamimuzzaman, M., Gilliard, A., and Ling, K.-S. 2021. Effectiveness of disinfectants against the spread of tobamoviruses: Tomato brown rugose fruit virus and Cucumber green mottle mosaic virus. Virology Journal 18:7 DOI: 10.1186/s12985-020-01479-8
Crandall, S.G., Ramon, M.L., Burkhardt, A.K., Bello, J.C., Adair, N., Gent, D.H., Hausbeck, M.K., Quesada-Ocampo, L.M., and Martin, F.N. 2021. A multiplex TaqMan qPCR assay for detection and quantification of clade 1 and clade 2 isolates of Pseudoperonospora cubensis and Pseudoperonospora humuli. Plant Disease 105: 3154-3161. DOI: 10.1094/PDIS-11-20-2339-RE
D’Arcangelo K. N., Adams M. L., Kerns J. P., and Quesada-Ocampo L. M. 2021. Assessment of fungicide product applications and program approaches for control of downy mildew on pickling cucumber in North Carolina. Crop Protection 140: 105412. DOI: 10.1016/j.cropro.2020.105412
D’Arcangelo K., Quesada-Ocampo L. M., and Hausbeck M. K. 2021. Diseases of cucurbits: Cucurbit downy mildew. In: Handbook of Vegetable and Herb Diseases. Editors: Elmer W., McGrath M. T., and McGovern R. Springer.
Fulton JC, Cullen MA, Beckham K, Sanchez T, Xu Z, Stern P, Vallad G, Meru G, McGregor C, Dufault NS. (2021) A Contrast of Three Inoculation Techniques used to Determine the Race of Unknown Fusarium oxysporum f.sp. niveum Isolates. J Vis Exp. (176). doi: 10.3791/63181. PMID: 34779434.
Kavalappara, S.R., Milner, H., Konakalla, N.C., Morgan, K., Sparks, A.N., McGregor, C., Culbreath, A.K., Wintermantel, W.M. & S. Bag. 2021. High throughput sequencing-aided survey reveals widespread mixed infections of whitefly-transmitted viruses in cucurbits in Georgia, USA. Viruses, 13(6),988; DOI: 10.3390/v13060988
Keinath, A. P. (2021). Diseases of cucurbits: anthracnose. In: Handbook of Vegetable and Herb Diseases. Editors: Elmer W., McGrath M. T., and McGovern R. Springer.
Kousik C., Quesada-Ocampo L. M., Keinath A., Hausbeck M., Granke L., Naegele R., and Ji P. 2021. Managing stubborn oomycete plant pathogens. Plant Health Progress 22: 215-218.
Kwak, H.R., H.S., Byun, H.S. Choi, J.W. Han, C.S. Kim, W.M. Wintermantel, J.E. Kim, and M. Kim. 2021. First report of cucurbit chlorotic yellows virus infecting cucumber in South Korea. Plant Dis. DOI: 10.1094/PDIS-10-20-2254-PDN.
Mondal S, Jenkins Hladky LL, Melanson RA, Singh R, Sikora E, Wintermantel WM. 2021. First report of cucurbit yellow stunting disorder virus and cucurbit chlorotic yellows virus in cucurbit crops in Alabama. Plant Dis. 2021 Jun 28. DOI: 10.1094/PDIS-05-21-0922-PDN
Parada-Rojas C. H., Quesada-Ocampo L. M., and Hausbeck M. K. 2021. Diseases of cucurbits: Phytophthora blight. In: Handbook of Vegetable and Herb Diseases. Editors: Elmer W., McGrath M. T., and McGovern R. Springer.
Parada-Rojas, C.H., Granke, L.L., Naegele, R.P, Hansen, Z., Hausbeck, M.K., Kousik S., McGrath M. T., Smart C., and Quesada-Ocampo L. M. 2021. A Diagnostic Guide for Phytophthora capsici Infecting Vegetable Crops. Plant Health Progress 22: 404-414. DOI: 10.1094/PHP-02-21-0027-FI
Rahman A., Standish J.R., D’Arcangelo K. N., and Quesada-Ocampo L. M. 2021. Clade-specific biosurveillance of Pseudoperonospora cubensis using spore traps for precision disease management of cucurbit downy mildew. Phytopathology 111: 312-320. DOI: 10.1094/PHYTO-06-20-0231-R
Rennberger, G., and Keinath, A. P. (.2021. Diseases of cucurbits: gummy stem blight. In: Handbook of Vegetable and Herb Diseases. Editors: Elmer W., McGrath M. T., and McGovern R. Springer.
Salcedo A., Parada-Rojas C. H., Guerrero R., Stahr M., D’Arcangelo K.N., McGregor C., Kousik C., Wehner T., and Quesada-Ocampo L. M. 2021. The NLR family of disease resistance genes in cultivated watermelon and other cucurbits: opportunities and challenges. Chapter 3. In: The Watermelon Genome. Editors: Dutta S. K. and Reddy U. Springer.
Salcedo A., Purayannur S., Standish J. R., Miles T., Thiessen L., and Quesada-Ocampo L. M. 2021. Fantastic downy mildew pathogens and how to find them: Advances in detection and diagnostics. Plants 10: 435. DOI: 10.3390/plants10030435
Schultheis, J.R. 2017. Cultural production (p. 11-16). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.001
Stajich, JE, Vu, AL, Judelson, H, Vogel, GM, Gore, MA, Carlson, MO, Devitt, N, Jacobi, J, Mudge, J, Lamour, K, and Smart, CD. 2021. High quality reference genome for the oomycete vegetable pathogen Phytophthora capsici strain LT1534. Microbiology Resource Announcements Volume 10 Issue 21. DOI: 10.1128/MRA.00295-21
Toporek, S. M., and Keinath, A. P. 2021. Diseases of cucurbits: Pythium damping-off and root and stem rot. In: Handbook of Vegetable and Herb Diseases. Editors: Elmer W., McGrath M. T., and McGovern R. Springer.
Vogel, GM, Gore, MA, and Smart CD 2021. Genome-wide association study in New York Phytophthora capsici isolates reveals loci involved in mating type and mefenoxam sensitivity. Phytopathology https://doi.org/10.1094/PHYTO-04-20-0112-FI
Zhang C, Mansfeld BN, Lin YC, Grumet R. 2021. Quantitative high-throughput, real-time bioassay for plant pathogen growth in vivo. Frontiers Plant Sci 12:637190. DOI: 10.3389/fpls.2021.637190
Hausbeck, M.K., C.S. Krasnow, and S.D. Linderman. 2020. Methyl bromide alternatives for Phytophthora capsici on Michigan’s cucurbit crops. Acta Horticulturae 1270: 307-314. DOI: 10.17660/ActaHortic.2020.1270.37
Trandel, M.A. 2020. Cell wall polysaccharides in grafted and non-grafted ‘Liberty’ watermelon with hollow heart. North Carolina State University. PhD Dissertation, 199 pp.
Vogel, G.M.,M.A. Gore, and C.D. Smart. 2020. Genome-wide association study in New York Phytophthora capsici isolates reveals loci involved in mating type and mefenoxam sensitivity. Phytopathology. DOI:10.1101/2020.04.01.020826
Keinath, A.P., S.A. Miller, and C.D. Smart. 2019. Response of Pseudoperonospora cubensis to preventative fungicide applications varies by state and year. Plant Health Progress. DOI: 10.1094/PHP-04-19-0028-RS
Keinath, A.P., W.P. Wechter, W.B. Rutter, and P.A. Agudelo. 2019. Cucurbit rootstocks resistant to Fusarium oxysporum f.sp. niveum remain resistant when co-infected by Meloidogyne incognita in the field. Plant Disease. 103:1383-1390. DOI: 10.1094/PDIS-10-18-1869-RE
Crandall, S.G., A. Rahman, L.M. Quesada-Ocampo, F.N. Martin, G.J. Bilodeau, and T.D. Miles. 2018. Advances in diagnostics of downy mildews: lessons learned from other oomycetes and future challenges. Plant Disease 102: 265-275. DOI: 10.1094/PDIS-09-17-1455-FE.
Keinath, A.P., K.S. Ling, S. Adkins, D.K. Hasegawa, A.M. Simmons, S. Hoak, H.C. Mellinger, and C.S. Kousik. 2018. First report of Cucurbit leaf crumple virus infecting three cucurbit crops in South Carolina. Plant Health Progress 19:322-323. DOI: 10.1094/PHP-07-18-0039-BR
Keinath, A.P., G. Rennberger, and C.S. Kousik. 2018. First report of resistance to boscalid in Podosphaera xanthii, cucurbit powdery mildew, in South Carolina. Plant Health Progress 19:220-221. DOI: 10.1094/PHP-03-18-0009-BR
Lebeda, A., E. Křístková, B. Sedláková, J.D. McCreight, and E. Kosman. 2018. Virulence variation of cucurbit powdery mildews in the Czech Republic – population approach. European J. Plant Pathol. DOI: 10.1007/s10658-018-1476-x
Parada-Rojas, C.H. and L.M. Quesada-Ocampo. 2018. Analysis of microsatellites from transcriptome sequences of Phytophthora capsici and applications for population studies. Scientific Reports 8: 5194. DOI: 10.1038/s41598-018-23438-8.
Rennberger, G., C.S. Kousik, and A.P. Keinath. 2018. First report of powdery mildew on Cucumis zambianus, Cucurbita digitata and Melothria scabra caused by Podosphaera xanthii. Plant Disease 102:246. DOI: 10.1094/PDIS-06-17-0916-PDN
Schultheis, J.R., and K.D. Starke. 2018. Standard size watermelon cultivar yield and quality results, North Carolina, 2017. HortScience 53(9):S502.
Starke, K.D., and J.R. Schultheis. 2018. Mini watermelon cultivar yield and quality results, North Carolina, 2017. HortScience 53 (9):S502.
Trandel, M.A., P. Perkins-Veazie, J.R. Schultheis, C. Gunter, and E. Johannes. 2018. Hollow heart formation in grafted and nongrafted watermelons. HortScience 53(9):S503 (abstr.). Cucurbitaceae 2018.
Wechter, P., R. Hassell, and A. Levi. 2018. Plant variety protection (PVP) for ‘Carolina Strongback’ a watermelon rootstock with resistance to Fusarium wilt and root-knot nematodes. USDA ARS Research Project #432455
Adkins, S.T., W. Turechek, P.D. Roberts, S.E. Webb, C.A. Baker, and C.S. Kousik. 2017. Squash vein yellowing virus. (p. 149-151). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: https:/10.1094/9780890545744.002
Adkins, S.T., and C.S. Kousik. 2017. Cucumber vein yellowing virus (p. 143-144). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.002
Carlson, M.O., E. Gazave, M.A. Gore, and C.D. Smart. 2017. Temporal genetic dynamics of an experimental, biparental field population of Phytophthora capsici. Frontiers in Genetics 8:26. DOI: 10.3389/fgene.2017.00026
Hausbeck, M.K. and L.M. Quesada-Ocampo. 2017. Phytophthora crown and root rot (p. 43-45). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.002
Parada-Rojas, C. H., and L. M. Quesada-Ocampo. 2017. Population structure of the oomycete soilborne pathogen Phytophthora capsici in North Carolina. Phytopathology 107 (12): 21.
Quesada-Ocampo, L.M., T.C. Wehner, and J.E. Staub. 2017. Moisture stress (p. 187-188). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.004
Quesada-Ocampo, L.M., T.C. Wehner, and J.E. Staub. 2017. Temperature stress (p. 188-189). In: A.P. Keinath, W.M. Wintermantel and T.A. Zitter (eds.). Compendium of cucurbit diseases and pests, second edition. APS Press, St. Paul, Minn. DOI: 10.1094/9780890545744.004
Rahman, A., T. D. Miles, F. N. Martin, and L. M. Quesada-Ocampo. 2017. Molecular approaches for development of biosurveillance tools for the cucurbit downy mildew pathogen Pseudoperonospora cubensis. Canadian Journal of Plant Pathology 39: 282-296. DOI: 10.1080/07060661.2017.1357661
Tabima, J.F., S.E. Everhart, M.M. Larsen, A.J. Weisberg, Z.N. Kamvar, M.A. Tancos, C.D. Smart, J.H. Chang, and N.J. Grünwald. 2017. Microbe-ID: An open source toolbox for microbial genotyping and species identification. PeerJ 4:e2279; DOI: 10.7717/peerj.2279
Thomas, A., I. Carbone, K. Choe, L. M. Quesada-Ocampo, and P. Ojiambo. 2017. Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis. Ecology and Evolution 7: 6231-6246. DOI: 10.1002/ece3.3194
Wallace, E. and L. M. Quesada-Ocampo. 2017. Analysis of microsatellites from the transcriptome of downy mildew pathogens and their application for characterization of Pseudoperonospora populations. PeerJ 5: e3266. DOI: 10.7717/peerj.3266
Webster, C.G., W.W. Turechek, W. Li, C.S. Kousik, and S. Adkins. 2017. Development and evaluation of ELISA and qRT-PCR for identification of Squash vein yellowing virus in cucurbits. Plant Disease 101:178-185. DOI: 10.1094/PDIS-06-16-0872-RE
Lebeda, A., E. Křístková, B. Sedláková, J.D. McCreight, and M.D. Coffey. 2016. Cucurbit powdery mildews: methodology for objective determination and denomination of races. European Journal of Plant Pathology 144:399–410. DOI: 10.1007/s10658-015-0776-7
Naegele, R. P., L.M. Quesada-Ocampo, J.D. Kurjan, C. Saude, and M.K. Hausbeck. 2016. Regional and temporal population structure of Pseudoperonospora cubensis in Michigan and Ontario. Phytopathology 106: 372-379. [PDF] DOI: 10.1094/PHYTO-02-15-0043-R
Wallace, E., Y.J. Choi., M. Thines, and L.M. Quesada-Ocampo. 2016. First report of Plasmopara aff. australis on Luffa cylindrica in the United States. Plant Disease 100: 537. DOI: 10.1094/PDIS-06-15-0684-PDN.
Withers, S., E. Gongora-Castillo, D. Gent, A. Thomas, P. Ojiambo, and L.M. Quesada-Ocampo. 2016. Using next-generation sequencing to develop molecular diagnostics for Pseudoperonospora cubensis, the cucurbit downy mildew pathogen. Phytopathology 106: 1105-1116. DOI: 10.1094/PHYTO-10-15-0260-FI
Cohen, Y., K.M. VandenLangenberg, T.C. Wehner, P.S. Ojiambo, M. Hausbeck, L.M. Quesada-Ocampo, A. Lebeda, H. Sierotzki, and U. Gisi. 2015. Resurgence of Pseudoperonospora cubensis: the causal agent of cucurbit downy mildew. Phytophathology 105: 998-1012. DOI: 10.1094/PHYTO-11-14-0334-FI
Palma, M.A., L.A. Ribera, and R.D. Knutson. 2016. “The Era of the Functional Consumer.” Journal of Food Products Marketing. 2:5, 555-570. DOI: 10.1080/10454446.2015.1121425
Summers, C.F., N. Adair, D.H. Gent, M.T. McGrath, and C.D. Smart. 2015. Pseudoperonospora cubensis and P. humuli detection using species-specific probes and high definition melt curve analysis. Canadian Journal of Plant Pathology 37:315-330. DOI: 10.1080/07060661.2015.1053989
Wallace, E., M. Adams., and L.M. Quesada-Ocampo. 2015. First report of downy mildew on buffalo gourd (Cucurbita foetidissima) caused by Pseudoperonospora cubensis in North Carolina. Plant Disease 99: 1861. DOI: 10.1094/PDIS-03-15-0348-PDN
Wintermantel, W.M., R.L. Gilbertson, J.D. McCreight, and E.T. Natwick. 2015. Host-specific relationship between virus Titer and Whitefly Transmission of Cucurbit yellow stunting disorder virus. Plant Disease 100: 92-98. DOI: 10.1094/PDIS-11-14-1119-RE
